PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538944.1_FGP027
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 512aa    MW: 53504.1 Da    PI: 5.2411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538944.1_FGP027genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-056683219
                       EETTTTEEESSHHHHHHH CS
            zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                       +C++Cgk F++++++  H
  KN538944.1_FGP027 66 VCKNCGKEFTSWEHFLEH 83
                       7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551406585IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1416592IPR007087Zinc finger, C2H2
SuperFamilySSF576674.06E-8223246No hitNo description
SMARTSM003550.13224246IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-9224248IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242224251IPR007087Zinc finger, C2H2
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SuperFamilySSF576674.06E-8332359No hitNo description
SMARTSM003553.7337359IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182337359IPR007087Zinc finger, C2H2
PfamPF139124.2E-11337360IPR007087Zinc finger, C2H2
PROSITE patternPS000280339359IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MRAHGVGDGD GLGADDDDSL GDEAVRRARG GADDPWNAGG PSSSGAATHV YALRTNPNRV  60
TRSRQVCKNC GKEFTSWEHF LEHGKCSSGE DDDDEDDADR SLQPWSPSPD ADGEEDPAPA  120
AGWLKGKRSR RCKGTGVDLS PTPSACAAGE EEDLANCLVM LSSSKVDQAG VTEAEQPSSS  180
SASKEHKRLI TFMEPTTYVL DTVMALPPPA PAPQYVSTVP RGMFECKACK KVFSSHQALG  240
GHRASHKKVK GCFAAKLESN AAEVAEPSHH AEVADRSEDN PGKATSDARR NVHASMDGDA  300
NAGTSDAAAE LSMAIVPIEP PVAALAAAPL KKKDKMHECS VCHRLFTSGQ ALGGHKRCHW  360
LTSSSADHTA SVPPLADDLV PLSFRPMLDA PEPALDLSIA ANPPLLASAA TVRPKVGGSS  420
FHLDAPPPVY IPSSPAIPSQ RNKATATTGS QNANDAVGLS TAAAEDEADS TTVKRARLSD  480
LKDVSMAGET TPWLQVGIGS SSRGGGDDND KE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538944.1_FGP027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLI1PNN80.0I1PNN8_ORYGL; Uncharacterized protein
STRINGORGLA04G0180700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-20C2H2-like zinc finger protein