PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538945.1_FGP018
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 127aa    MW: 14500.8 Da    PI: 10.5787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538945.1_FGP018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.65.8e-41211017128
                NAM  17 eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                        +yL++k+ g +l +  vi+evd+yk++PwdLp+++ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s   ++v +kk Lvf
  KN538945.1_FGP018   2 YYLCRKCGGLPLAA-PVIAEVDLYKFNPWDLPERAMGGEKEWYFFSPRDRKYPNGQRPNRAAGTGYWKATGADKPVGS--PRAVAIKKALVF 90 
                        8**********999.89***************8888999*************************************99..678********* PP

                NAM 109 ykgrapkgektdWvmheyrl 128
                        y g+ pkg+kt+W+mheyrl
  KN538945.1_FGP018  91 YAGKPPKGVKTNWIMHEYRL 110
                        ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.3451127IPR003441NAC domain
SuperFamilySSF1019411.57E-451114IPR003441NAC domain
PfamPF023651.6E-162110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MYYLCRKCGG LPLAAPVIAE VDLYKFNPWD LPERAMGGEK EWYFFSPRDR KYPNGQRPNR  60
AAGTGYWKAT GADKPVGSPR AVAIKKALVF YAGKPPKGVK TNWIMHEYRL ADVDRSARKK  120
NTLRVRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-56211031140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538945.1_FGP018
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281840.0AB028184.1 Oryza sativa mRNA for OsNAC5 protein, complete cds.
GenBankAK0633990.0AK063399.1 Oryza sativa Japonica Group cDNA clone:001-114-H12, full insert sequence.
GenBankAK1024750.0AK102475.1 Oryza sativa Japonica Group cDNA clone:J033094I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617286.12e-81NAC domain-containing protein 71
SwissprotQ53NF72e-82NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A0E0F3465e-80A0A0E0F346_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0R5216e-80A0A0E0R521_ORYRU; Uncharacterized protein
TrEMBLA3C9B38e-82A3C9B3_ORYSJ; Uncharacterized protein
STRINGOMERI11G04240.18e-81(Oryza meridionalis)
STRINGORUFI11G05080.19e-81(Oryza rufipogon)
STRINGOS11T0184900-027e-81(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.18e-73NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]