PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538946.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 278aa    MW: 31360 Da    PI: 10.1206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538946.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-06628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cgk F r  nL+ H r H
  KN538946.1_FGP010  6 FVCEICGKGFQRDQNLQLHRRGH 28
                       89*******************88 PP
2zf-C2H212.90.0003482104123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  KN538946.1_FGP010  82 WKCDKCSKRYAVQSDWKAHSKIC 104
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.95E-8528No hitNo description
Gene3DG3DSA:3.30.160.606.8E-6628IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614628IPR007087Zinc finger, C2H2
SMARTSM003550.012628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552604777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.95E-877102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
PfamPF070475.0E-21129212IPR010754Optic atrophy 3-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRSGK EPRKRVYVCP EKSCVHHNPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRL  120
SHGLSDRFIR SPACWMCSIN HRVTTRIQRR IYGHATDVEI TPLNEEKAVQ AATDLIGEGF  180
IFSVAVAALI FEVQRSARSE ARKEEARKQE LEVSFSAVAA TAAAAELKQR EESLSKDLED  240
LKLRLAEIEH LAKGRGLSGI LNFKGVLGAE SSKAATPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-2178129349Zinc finger protein JACKDAW
5b3h_F3e-2178129349Zinc finger protein JACKDAW
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538946.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074680.0AK107468.1 Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence.
GenBankAP0032010.0AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-82indeterminate(ID)-domain 2