PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538949.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 373aa    MW: 41615.3 Da    PI: 4.3882
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538949.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35541452102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+ ++  +sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++l
  KN538949.1_FGP014  54 FLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANENFLRGQRHL 136
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+k 
  KN538949.1_FGP014 137 LKNIKRRKP 145
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.4E-6150143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3850143IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-3550143IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-185477IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3154143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDDPMLNAVK EEESHGDGGG LEVVAGEDGA AAAVAAGVAP RPMEGLHDAG PPPFLTKTYD  60
MVDDAGTDAA VSWSATSNSF VVWDPHAFAT VLLPRFFKHN NFSSFVRQLN TYGFRKVDPD  120
RWEFANENFL RGQRHLLKNI KRRKPPSHTA SNQQSLGPYL EVGHFGYDAE IDRLKRDKQL  180
LMAEVVKLRQ EQQNTKANLK VMEDRLQGTE QRQQQMMAFL ARVMKNPEFL KQLMSQNEMR  240
KELQDAISKK RRRRIDQGPE VDDVGTSSSI EQESPALFDP QESVEFLIDG IPSDLENSAM  300
DAGGLVEPQD FDVGASEQQQ IGAQGELNDN FWEELMNEGL VGEENDNPVV EDDMNVLSEK  360
MGYLNSNGPT AGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-264914321129Heat shock factor protein 1
5d5v_B1e-264914321129Heat shock factor protein 1
5d5v_D1e-264914321129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142LKNIKRR
2248253KKRRRR
3249254KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538949.1_FGP014
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4091860.0AM409186.1 Oryza sativa Indica Group mRNA for heat shock factor A2b (hsfA2b gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645272.10.0heat stress transcription factor A-2b
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A0D3GMX30.0A0A0D3GMX3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HXC40.0A0A0E0HXC4_ORYNI; Uncharacterized protein
TrEMBLA8Y7N10.0A8Y7N1_ORYSI; Heat shock factor A2b
STRINGOS07T0178600-010.0(Oryza sativa)
STRINGONIVA07G03730.10.0(Oryza nivara)
STRINGOBART07G04960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]