PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538950.1_FGP018
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 148aa    MW: 16389.9 Da    PI: 4.3953
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538950.1_FGP018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.24.8e-101203655
            G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                       m+vk+Ltl+hvkSHLQ+YR+
  KN538950.1_FGP018  1 MDVKDLTLAHVKSHLQMYRT 20
                       9******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-8120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDVKDLTLAH VKSHLQMYRT IKTTDHKQPA PPYGQTKTII EIPDDNLFDI NNTSGSESSV  60
QQQSNLDGNE QGSNMCALWS NNSSSRGAWF HDKSRDATPG DIKSFEDVQS QSPEDDDASD  120
LNSPPFQIPE TTTVSAMKPN LDFSLGRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538950.1_FGP018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058595e-71AP005859.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1053A04.
GenBankAP0058685e-71AP005868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0666E12.
GenBankAP0149585e-71AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689061.14e-96PREDICTED: probable transcription factor KAN2
TrEMBLA0A0D3F9952e-99A0A0D3F995_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YWU42e-97A0A0D9YWU4_9ORYZ; Uncharacterized protein
STRINGOGLUM02G29460.13e-98(Oryza glumipatula)
STRINGOBART02G28890.11e-100(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.13e-15G2-like family protein