PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538953.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 87aa    MW: 9945.46 Da    PI: 8.8112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538953.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.46.7e-111946128
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkl 28
                       lppGfrFhPtdeelvv+yL++++  ++ 
  KN538953.1_FGP006 19 LPPGFRFHPTDEELVVQYLRRRALCEQR 46
                       79*******************9887764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-101443IPR003441NAC domain
PROSITE profilePS5100511.3321987IPR003441NAC domain
PfamPF023655.3E-82079IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRR ALCEQRRGQV LLRRAAGGER  60
RRREGEEAAV DCQFAHFFMQ ELIVFVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538953.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415666e-57CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence.
GenBankKJ6902496e-57KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.19e-08NAC domain containing protein 16