PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538953.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 1339aa    MW: 149125 Da    PI: 6.8194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538953.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.11.9e-07725744222
                AP2   2 gykGVrwdkkrgrWvAeIrdp 22 
                        +y+GVr+++ +g+W+AeIrdp
  KN538953.1_FGP014 725 RYRGVRQRP-WGKWAAEIRDP 744
                        7********.**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd112998.92E-10488422No hitNo description
PfamPF102503.8E-46123416IPR019378GDP-fucose protein O-fucosyltransferase
SuperFamilySSF541714.18E-5725753IPR016177DNA-binding domain
PROSITE profilePS5103211.087725754IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-8725746IPR001471AP2/ERF domain
PRINTSPR010431.3E-55745759IPR002315Glycyl-tRNA synthetase
SuperFamilySSF556812.07E-117745965No hitNo description
CDDcd007743.44E-1017451075IPR033731Glycyl-tRNA synthetase-like core domain
TIGRFAMsTIGR003894.0E-1997451314IPR002315Glycyl-tRNA synthetase
Gene3DG3DSA:3.30.930.108.7E-124747810No hitNo description
PROSITE profilePS5086212.4747511205IPR006195Aminoacyl-tRNA synthetase, class II
Gene3DG3DSA:3.30.930.108.7E-124879965No hitNo description
PRINTSPR010431.3E-55882894IPR002315Glycyl-tRNA synthetase
PRINTSPR010431.3E-55901918IPR002315Glycyl-tRNA synthetase
PfamPF005871.5E-99011199IPR002314Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)
PRINTSPR010431.3E-55933950IPR002315Glycyl-tRNA synthetase
PRINTSPR010431.3E-55950960IPR002315Glycyl-tRNA synthetase
SuperFamilySSF556812.07E-11710081081No hitNo description
Gene3DG3DSA:3.30.930.108.7E-12410081103No hitNo description
Gene3DG3DSA:3.30.930.108.7E-12411701199No hitNo description
SuperFamilySSF556812.07E-11711751229No hitNo description
PRINTSPR010431.3E-5511801192IPR002315Glycyl-tRNA synthetase
CDDcd008584.39E-4911961316No hitNo description
SuperFamilySSF529542.11E-3012141329IPR004154Anticodon-binding
Gene3DG3DSA:3.40.50.8001.6E-3512181330IPR004154Anticodon-binding
PfamPF031294.5E-1812261313IPR004154Anticodon-binding
PRINTSPR010431.3E-5512651284IPR002315Glycyl-tRNA synthetase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006426Biological Processglycyl-tRNA aminoacylation
GO:0046686Biological Processresponse to cadmium ion
GO:0005739Cellular Componentmitochondrion
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004820Molecular Functionglycine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1339 aa     Download sequence    Send to blast
MSSAAAAAWW ARSRVRILIP VIFLAPALFF LLSPPSSPPF FFTLPTSREE SPSASGSRVI  60
WAQQRVAEWR PCGWWRAAMP APSRRNGYIR IDCYGGLNQL RRDWDQMSVG FLDFAVRSFG  120
HAQVLCDGIA VARILNATMV LPKFEVAAYW NESSGFADVF DVDYFIEQTR GYVEVVKDMP  180
EEIASKEPFK VDCSKRKGHF DYVETVLPAL LEHQYISLTP AMSQRRDRNP SYAKASYCQG  240
CYNALRLNKN VETKAIELLQ AIPKPFLSLH LRFEPDMVAY SRCVYTGLSS KSLSAIEAAR  300
GEDRKALTGE AALLWRNRGK CPLTPSETAF ILKALGIPTD TNIYLAAGDG LMELEGFTSI  360
YKNIYTKSSL LTHDDFEKMH GNTKAALDYY VSVSSDAYVA TFFGNMDKMV TAMRTMQGHQ  420
KTLVLSRRAY ANYTAVGLSG EQLAMAMWDA HREEYIMGRG SALPEQCFCE FKLIFRCANM  480
DENFTAIESN ADDKEETVLG EMGFHSQHGG WALWREAGSR TEMHLGPPSV SPAYCFDFSA  540
LHYSYRFCSV ELGKKLDASM MTVIILTIGN QEVNFSYSSY QCSSASSAIK GTRVDRLREA  600
SDTGHHRGRH KRARSSSPPR HDDEPPPPPP PPAVTGGAHG VGGSGSGAWR STVLAEDVES  660
AVIVAALTHV ISSTAAACAV HMHDICMNHD GLIAVMQQPP RGFPPLPSSS GSAATAPEQQ  720
QPRRRYRGVR QRPWGKWAAE IRDPIYRGVA GLYDYGPPGC AVKANVLAFW RQHFVLEENM  780
LEVDCPCVTP EIVLKASGHV EKFTDLMVKD EKTGTCYRAD HLLKDHCKEK LEKDLTLSPE  840
KAAELKHVLA VLDDLSADEL GAKIKEYGIV APDTKNPLSD PYPFNLMFQT SIGPTGLNVG  900
YMRPETAQGI FVNFKDLYYY NGQKLPFAAA QIGQAFRNEI SPRQGLLRVR EFTLAEIEHF  960
VDPEDKSHPK FVDVADLEFL MFPRELQLSG ESAKLVKLGE AVSKGTVNNE TLGYFIGRVY  1020
LFLTRLGIDK NRLRFRQHLP NEMAHYAADC WDAEIECSYG WIECVGIADR SAYDLRAHSE  1080
KSSVPLVAHE KFSKPREVEK LVIVPSKKDL GLAFKGNQKM VVEALEAMSE KEAMDMKAAL  1140
ESSGETNFQV CTLGKDVVIT KKMVSISMEK KLEQQRVFTP SVIEPSFGIG RIIYCLFEHS  1200
FYTRPSKSEE EQLNVFKFPP IVAPIKCTVF PLVKNQEFDD AAKVIDKALT TAGISHIIDT  1260
TAISIGRRYA RTDEIGVPFA VTVDSATSVT IRERDSKEQI RVGIDEVASV VKQLTDGQST  1320
WADVSFKYPS HIGPQGDQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kr2_A0.0745132930614Glycine--tRNA ligase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538953.1_FGP014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1198360.0AK119836.1 Oryza sativa Japonica Group cDNA clone:002-178-B03, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP293222