PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538954.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 398aa    MW: 42759.1 Da    PI: 8.4199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538954.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-121591981155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        rRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  KN538954.1_FGP008 159 RRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 198
                        8******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.107148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16151206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-13152202No hitNo description
SMARTSM003531.0E-13155203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAKLELSCGK KKKEKSLVMR TATNCSRSDG NDFAELLWEN GQAVVHGRKK HPQPAFPPFG  60
FFGGTGGGGG GSSSRAQERQ PGGIDAFAKA RKAPEATVAT SSVCSGNGAG SDELWRQQKR  120
KCQAQAECSA SQDDDLDDEP GVLRKSGTRS TKRSRTAERR RDRINEKMRA LQELIPNCNK  180
IDKASMLDEA IEYLKTLQLQ VQMMSMGTGL CIPPMLLPTA MQHLQIPPMA HFPHLGMGLG  240
YGMGVFDMSN TGALQMPPMP GAHFPCPMIP GASPQGLGIP GTSTMPMFGV PGQTIPSSAY  300
SVPPFASLAG LPVRPSGVPQ VSGAMANMVQ DQQQGIANQQ QQCLNKEAIQ GANPGDSQMQ  360
IIMQNVPVLK RSMAEEFHMV EDATRLQAVI LDFQCSFL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538954.1_FGP008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.11e-175transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
SwissprotQ0JNI91e-176PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0E0MUV10.0A0A0E0MUV1_ORYRU; Uncharacterized protein
STRINGORUFI01G12840.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-28phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]