PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538954.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 86aa    MW: 10153.6 Da    PI: 9.7708
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538954.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.53.7e-204985237
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  KN538954.1_FGP012 49 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQ 85
                       7***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.3134386IPR003657WRKY domain
SuperFamilySSF1182902.22E-174585IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-184585IPR003657WRKY domain
SMARTSM007742.5E-94886IPR003657WRKY domain
PfamPF031069.1E-175085IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MLDELTRSYS ALYHQYLQVT QQQNHRHPDH HLIMNNISNN RPNSLTQISD GCQWRKYGQK  60
MAKGNPCPRA YYRCTMAIGC PVRKQF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538954.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024805e-54AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149575e-54AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126095e-54CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880607.14e-50WRKY transcription factor 6 isoform X3
TrEMBLJ3KYY13e-42J3KYY1_ORYBR; Uncharacterized protein
STRINGOB01G21870.15e-43(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.18e-25WRKY family protein