PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538956.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 883aa    MW: 95979 Da    PI: 4.3937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538956.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.92.2e-2433639766128
                NAM  66 kkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +a+++r+nrat +gyWk+tgkd++v++ +g+lvg+kktLvf++grapkg++t+Wvmheyrl
  KN538956.1_FGP004 336 RVTASSERTNRATPRGYWKTTGKDRDVHH-RGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 397
                        5567789**********************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547914.09E-1832111IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-2038112IPR004088K Homology domain, type 1
SMARTSM003224.1E-1339112IPR004087K Homology domain
PROSITE profilePS5008416.45840107IPR004088K Homology domain, type 1
CDDcd023961.38E-2242108No hitNo description
PfamPF000131.8E-1443109IPR004088K Homology domain, type 1
SMARTSM003222.6E-11123196IPR004087K Homology domain
PROSITE profilePS5008414.11124191IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.3E-16126199IPR004088K Homology domain, type 1
PfamPF000137.4E-12127192IPR004088K Homology domain, type 1
SuperFamilySSF547919.64E-16127199IPR004088K Homology domain, type 1
CDDcd023967.04E-22127192No hitNo description
SuperFamilySSF547911.04E-16257338IPR004088K Homology domain, type 1
SMARTSM003226.1E-15265338IPR004087K Homology domain
PROSITE profilePS5008417.716266333IPR004088K Homology domain, type 1
CDDcd001057.81E-16268334No hitNo description
Gene3DG3DSA:3.30.1370.101.7E-18269342IPR004088K Homology domain, type 1
PfamPF000134.8E-13270335IPR004088K Homology domain, type 1
PROSITE profilePS5100524.242280415IPR003441NAC domain
SuperFamilySSF1019411.2E-27336415IPR003441NAC domain
PfamPF023652.5E-11342397IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MEAPGSPYAS SPESAPKRAP RSSPPPPQQQ ASSEDDKEKP THLRFLVSNT AAGCIIGKGG  60
STINEFQSQS GARIQLSRSH EFFPGTNDRI IMVSGLFDEV IKAMELILEK LLAEGEESNE  120
AEARPKVRLV VPNSSCGGII GKGGSTIKSF IEDSHAGIKI SPQDNNFVGL HDRLVTVTGP  180
LDHQMRAIYL ILSKLSEDVH YPPNLSSPFP YAGLGFPSYP GVPVGYMIPQ VPYNNAVNYG  240
PNGYGGRYQN NKPSTPMRSP ANNDAQDSLT IGIADEHIGA VVGRAGRNIT EIIQASGARI  300
KISDRGDFIA GTSERKVTIT GTSEAIQAAE SMIMQRVTAS SERTNRATPR GYWKTTGKDR  360
DVHHRGKLVG MKKTLVFHSG RAPKGQRTNW VMHEYRLLDA DGTQDLHVVC RIFQKNGSGP  420
QNGAQYGAPY LEEDWEEEDD AIENTPASGA FAEMAAVTDT ADEESTEEDG NFSLKTNEEP  480
LQTQEYQPEI TPVKAQDSNE ETNGGGYSCD VFSLDEILQE PENVCKNEEQ NAIDDNFTIA  540
ELSGYPRQDD GYVGENGPVN WIDPSNGDNT NWPLRAYSTQ NHVNGTLSAD GFFDTVNGTN  600
SYSGQQQVCP SDNQNLYLQD DGLTSSHQVG DNMPFYDASS NHKWVDGKDD YLNLNDLLYP  660
PAENQPLFDA GDDLMAYFDA TEDDFKFDIM GTEDSNSQLP DTSNFVQKDD NNNKFTLDGI  720
SNTALYGASS SGSHGNMYPD TAVPDMPMDD TVDKSFGKRL ASMLGSIPAP PAMASEFPPS  780
TGKSVVPLSA VNPSSSIRVT AGIIQLGGIT FTGSTERLQK NGDFNLLLSF TVEGDVSTKS  840
IGFEPDTQMS TTPMVLRSGM YLFFVSAMIL MLSYKVGLCI YSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ann_A2e-28431988176neuro-oncological ventral antigen 1
2anr_A2e-28431988176neuro-oncological ventral antigen 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538956.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021730.0AK102173.1 Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624689.10.0NAC domain-containing protein 78 isoform X1
TrEMBLA0A3L6EX010.0A0A3L6EX01_MAIZE; Protein BTR1
STRINGORGLA02G0329400.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-38NAC domain containing protein 2