PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538958.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 140aa    MW: 16036.1 Da    PI: 10.0496
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538958.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.27.5e-134499358
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                       e +r rr+++NRe+ArrsR RK+ ++ eL+  v  L   N++L +el++    ++ 
  KN538958.1_FGP001 44 EERRRRRMISNRESARRSRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCSD 99
                       56899******************************************998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-1542106IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5534495IPR004827Basic-leucine zipper domain
PfamPF001703.6E-104498IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-114695No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-104695No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
CDDcd147022.76E-125195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MAPSPFHFPA ATCEPIQELL PVVAGNRPAG SGSTDDAYQM AVEEERRRRR MISNRESARR  60
SRMRKQRQLS ELRGQVVHLR DANRRLLDEL NQAMRGCSDV HCENARLRKE RAELQTKLEH  120
LMQAQKNNTS PSSSQPCENI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15865RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538958.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083190.0AK108319.1 Oryza sativa Japonica Group cDNA clone:002-141-G12, full insert sequence.
GenBankAP0061690.0AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612405.11e-97basic leucine zipper 8
TrEMBLA0A0E0B4992e-96A0A0E0B499_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QSP82e-96A0A0E0QSP8_ORYRU; Uncharacterized protein
TrEMBLQ69JJ92e-96Q69JJ9_ORYSJ; Os09g0474000 protein
STRINGOGLUM09G14340.14e-97(Oryza glumipatula)
STRINGORUFI09G14730.14e-97(Oryza rufipogon)
STRINGOS09T0474000-014e-97(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.13e-10basic leucine-zipper 43