PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538958.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 670aa    MW: 71838 Da    PI: 5.4957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538958.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09498546355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  KN538958.1_FGP004 498 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 546
                        58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF130413.6E-10551IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.709535IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.6E-9741IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.5794175IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.31476106IPR002885Pentatricopeptide repeat
PfamPF015350.1181101IPR002885Pentatricopeptide repeat
PfamPF130412.1E-11108155IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.685108142IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.0E-7111143IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.481143179IPR002885Pentatricopeptide repeat
CDDcd000836.66E-11493550No hitNo description
SuperFamilySSF474591.2E-16493563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65495545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16496562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6498546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11501551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MQARDTVSWN TIISWCVENG EYEEAIAVFR EMLASMECLP DRVTMVSVIS AITYLGALAQ  60
GLWAHAYVCR KGIEVEERLS SALINMYSKC GCIESAVHVF ENLGAQMNVD TWNSMLAGFT  120
ANGCSEKALE LFTRMEITGL VPNKITFNTV LNACSHGGFV EEGTTNAYTA ILVIQIWNPL  180
LLLAPDGPLP TARLLEKASS RVDKQMPVRV GSVRDANMLC SVGYYYALGI RSLEPRLGDS  240
MDMNESSEKG MESNASSGPG NGIPVEWQSQ FSSAFACQPS VAAQHQQHAM MDSFAAASAG  300
LWASSDVVSA MSSAAPPRGA GFLAPVPGFL QQGLGHFPVD SGFIERAARS TCFGGGMMAG  360
GPYGAADQAM GDAFGGAAEG LMDHHRNVGN DKAEEEFAGN GHDEVPSSEV AGGDCSSKGS  420
DSKKRRRPNE VMGADQVHSS NLPSDSANES VHSKDKGEES SPATTNGGKS KGKGAKETSE  480
SQKEEYIHVR ARRGQATNSH SLAERLRREK ISERMKLLQD LVPGCSKVTG KAVMLDEIIN  540
YVQSLQRQVE FLSMKLATVN PRLDLNIEGL LSKDLLRFPG VPSSSIGFSP EMMHPQLQLS  600
QPGLIHGGTA GMANPDVFRR IIQAQLGAKD GSQQMPHSLN GSFSDVSQMA YPSLGSQDLS  660
IRPSQDGFQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-25116317338PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538958.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612417.10.0transcription factor bHLH49 isoform X1
RefseqXP_015612418.10.0transcription factor bHLH49 isoform X1
RefseqXP_015612419.10.0transcription factor bHLH49 isoform X1
RefseqXP_025876117.10.0transcription factor bHLH49 isoform X1
TrEMBLB9G4480.0B9G448_ORYSJ; Uncharacterized protein
STRINGORGLA09G0105100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-62bHLH family protein