PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538963.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 80aa MW: 8918.24 Da PI: 11.0634

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538963.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.3	4.8e-10	14	50	1	35
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgR 35 rg+W++eEde+l +v+ +G g +W + +++ g gR KN538963.1_FGP013 14 RGPWSPEEDEQLRSYVHSHGIGgNWIALPQKAGlRGR 50 89****************999******996666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-12	5	53	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.39E-8	8	52	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.259	9	50	IPR017877	Myb-like domain
Pfam	PF00249	4.3E-8	14	50	IPR001005	SANT/Myb domain
CDD	cd00167	8.06E-5	16	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVH SHGIGGNWIA LPQKAGLRGR HEKIRQKPSR 60 TRPKDGKKPV QSSTVVLFGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538963.1_FGP013

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC093956	6e-69	AC093956.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1263_E10, complete sequence.
GenBank	AC129717	6e-69	AC129717.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0079H23, complete sequence.
GenBank	AP014961	6e-69	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	6e-69	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637875.1	6e-26	transcription factor RAX2
Swissprot	Q9SJL7	1e-22	RAX2_ARATH; Transcription factor RAX2
TrEMBL	A0A0D9WJH3	2e-25	A0A0D9WJH3_9ORYZ; Uncharacterized protein
STRING	LPERR05G20870.1	3e-26	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	6e-25	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]