PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538970.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 153aa    MW: 17225 Da    PI: 6.8968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538970.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1529132198
                        EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f kvl+p dv+    +lv+p +++ +       + ++ + + +++ed    g+ W +++  +k+++ + +tkGW  +++++gL++gD+v F 
  KN538970.1_FGP002  29 FGKVLMPRDVSWAtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVAGKLWLFRY--WKRDDVHCFTKGWGCYAREKGLRAGDTVSFF 118
                        6689999999854499********9999999965555666677777755567*******..******************************9 PP

                        E-SSSEE..EEEEE- CS
                 B3  84 ldgrsefelvvkvfr 98 
                        ++   ++++++  +r
  KN538970.1_FGP002 119 HST-ACGRFFICCRR 132
                        765.55555666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-1723135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1727131IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-1528132No hitNo description
PfamPF023622.2E-1129132IPR003340B3 DNA binding domain
SMARTSM010190.003929133IPR003340B3 DNA binding domain
PROSITE profilePS508639.10730134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPRDVSW ATEQLVIPDE HVGKLLDMVV  60
MNRPEGGFFV VVVEDGEVAG KLWLFRYWKR DDVHCFTKGW GCYAREKGLR AGDTVSFFHS  120
TACGRFFICC RRTCTSFLSL PTTSHRVNGV QIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538970.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.11e-103putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B11e-104Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLA0A0D9YRV41e-103A0A0D9YRV4_9ORYZ; Uncharacterized protein
STRINGOGLUM02G15730.11e-103(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181381010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.18e-13B3 family protein