PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538970.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 213aa    MW: 22859.4 Da    PI: 10.9396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538970.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-1223694392
                       S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                       g+ W +++  +k+ g + ltkGW+ Fv+ +gLk+gD++ F +  + +++l
  KN538970.1_FGP007 23 GKLWCFRY--WKSNGVHGLTKGWRCFVRKKGLKAGDTISFFRG-SACGRL 69
                       799*****..*****************************9843.355544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.841177IPR003340B3 DNA binding domain
PfamPF023622.1E-92370IPR003340B3 DNA binding domain
CDDcd100173.50E-122372No hitNo description
SuperFamilySSF1019361.26E-112370IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-112384IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAASPPLSAA IVGAEESDGV VPGKLWCFRY WKSNGVHGLT KGWRCFVRKK GLKAGDTISF  60
FRGSACGRLF ICCKLGTRAT FASSSTLHHG FSMPPPPARP LVGLESGMLA RDVPSLGQAR  120
LHDGNQDGGG APSRHVPSSG RRVETQLSRV SSRRQRRTTK HSIPEPTIET PPILESMFLI  180
AAPPAVKCLR LFGVNIYVLP VSSSGQPKQE SSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538970.1_FGP007
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625111.11e-130B3 domain-containing protein Os02g0455800
SwissprotQ6K3B21e-131Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLA0A0E0CK371e-135A0A0E0CK37_9ORYZ; Uncharacterized protein
STRINGOGLUM02G15720.11e-135(Oryza glumipatula)
STRINGORGLA02G0134900.11e-135(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-10B3 family protein