PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538971.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 155aa    MW: 17461.8 Da    PI: 11.7718
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538971.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-1869111145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        r ++T+eE+e+l  a++ +G++ W++Iar ++ gRt++ +k++w+
  KN538971.1_FGP005  69 RRAFTEEEEERLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWH 111
                        678*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-95276IPR009057Homeodomain-like
SuperFamilySSF466892.57E-2152114IPR009057Homeodomain-like
PROSITE profilePS5129424.15864118IPR017930Myb domain
SMARTSM007171.0E-1268116IPR001005SANT/Myb domain
PfamPF002492.6E-1569111IPR001005SANT/Myb domain
CDDcd001674.30E-1271112No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1877111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAEVGRGSFA RGGTGGRRRT RGSRTSSRST APRTGTSSPR SSTADQVFVV AGKSCRLRWF  60
NQLDPRINRR AFTEEEEERL MAAHRAYGNK WALIARLFPG RTDNAVKNHW HEGRKQPRSS  120
DQNQAKMVYL VLFQAIKRNC CCETPRLCFA AFAPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-215211042100B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538971.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074611e-118AK107461.1 Oryza sativa Japonica Group cDNA clone:002-129-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6H1G01e-37A0A3B6H1G0_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-38myb domain protein 105