PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538976.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 264aa    MW: 29502.4 Da    PI: 4.7445
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538976.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.5e-121456148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEde+l  +++++G  +W+  ++        +++k++w+++l
  KN538976.1_FGP014 14 KGPWTPEEDEKLMSYIQKHGHASWRVLPELAD-----NEIKNFWNTHL 56
                       79************************888888.....********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17564IPR009057Homeodomain-like
SuperFamilySSF466891.79E-12966IPR009057Homeodomain-like
PROSITE profilePS5129415.883960IPR017930Myb domain
SMARTSM007176.8E-81358IPR001005SANT/Myb domain
PfamPF002494.8E-101456IPR001005SANT/Myb domain
CDDcd001675.01E-81656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRPPCCDEN GLKKGPWTPE EDEKLMSYIQ KHGHASWRVL PELADNEIKN FWNTHLRKKL  60
IKMGIDPMTH RPRTDFFQSL PQLIALANLR QIIERQPWDG HIEGLQTVAV QAAKLEYMQS  120
LLHSAVSIVT SPTTTTSSLN TFTTELEQTN HLCPPQVPSS SVPELAVQVP HSQMPSTSFD  180
QEIGKTNLFS NNIVNGNEWC SMEADNSSQK SLLVPENSIP PLIDMPVQNF CNTISTPNCD  240
GGNSIPLPSW SEILLDEELM GEFA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538976.1_FGP014
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644332.11e-148transcription factor MYB93
SwissprotQ9SBF32e-30MYB92_ARATH; Transcription factor MYB92
TrEMBLB9FS891e-177B9FS89_ORYSJ; Uncharacterized protein
STRINGOMERI06G08800.11e-172(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-29myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]