PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538977.1_FGP021
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 526aa    MW: 57967.1 Da    PI: 5.1051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538977.1_FGP021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13347393354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++h + ErrRR+++N+ f  L++++P+        K++Ka+iLe+++ Y+k L
  KN538977.1_FGP021 347 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 393
                        57999**********************66......***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.5E-4622197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.472344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-14347398No hitNo description
SuperFamilySSF474594.71E-17348407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15348404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MASAPPVQEE PLQPGTNHFK SLLAAAVRSI SWSYAIFWSI SSSCPGVLTW NDGFYNGVVK  60
TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV  120
CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKTIVCIPF MSGVLEVGTT  180
DPVLEDPNLV KRVIAYFQEL QFPICLEVLK STSPSPNETE DSDIVSEGLI THNAIEEGQM  240
VVADHECVSN ANRDPITMEI DELYSIYEDL DLDLDMDLDT VRFLEDNGWP VNPSSFQLRS  300
AKSNEMAVPV VTGIESQKLL KKVVDCGARM STGRGSRAAL TQEIGIKNHV ISERRRREKL  360
NEMFLILKSI VPSIHKVDKA SILEETIAYL KVLEKRVKEL ESSSEPEPSH QRATETGQQR  420
RCEITGKELV SEIGVSGGGD AGREHHHVNV TVTDKVVLLE VQCRWKELVM TRVFDAIKSL  480
CLDVLSVQAS APDGLLGLKM QAKFACSGSV VAPGMISEAL QKAIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1851972192Transcription factor MYC3
4rqw_B2e-1851972192Transcription factor MYC3
4rs9_A2e-1851972192Transcription factor MYC3
4yz6_A2e-1851972192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357ERRRRE
2353358RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538977.1_FGP021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117040.0AK111704.1 Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.10.0anthocyanin regulatory R-S protein
SwissprotP135261e-159ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0PCH50.0A0A0E0PCH5_ORYRU; Uncharacterized protein
STRINGORUFI04G22890.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.12e-70bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]