PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538984.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 419aa    MW: 46765.3 Da    PI: 8.9859
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538984.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93e-141441760
           trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60
                       m+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+
  KN538984.1_FGP009  1 MDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKQ 44
                       6889************************************9884 PP
2trihelix109.52.1e-34150235187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r e++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  KN538984.1_FGP009 150 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 235
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.51E-14144No hitNo description
PfamPF138374.8E-9444No hitNo description
PROSITE profilePS500904.9251542IPR017877Myb-like domain
PROSITE profilePS500907.805143207IPR017877Myb-like domain
SMARTSM007178.3E-6147209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-4149206IPR009057Homeodomain-like
PfamPF138379.4E-24149236No hitNo description
CDDcd122035.54E-28150214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDATFRDATL KGPLWEEVSR KLAELGYKRS AKKCKEKFEN VHKQEEMQRR FLETMEKREA  60
ERTAREEAWR RQEVPRLNRE QEQLAQERAA AASRDAAIIS FLQRIGGQSV QVPPAATVIQ  120
MPTPVQLQTP PPHVESGLGG GEGGSASSSR WPKTEVQALI QLRMELDMRY QETGPKGPLW  180
EEISSGMRRL GYNRSSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDAIYRRK  240
HLTGGGGGGA SAANVAATAI EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ VPTSNGDTAP  300
TTATFDVDSG MKKRFKLNMR MFVRKLTGNP LAVKPEDIVR ELSEQPPREF TTDETDSDDM  360
GDDYTDDGEE GEDDGKMQYR IQFQRPNPGG ATTAPPPATT PASAVPTSTP TSTFLAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538984.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071390.0AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBankX682610.0X68261.1 O.sativa gt-2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880668.11e-142trihelix transcription factor GTL1 isoform X1
SwissprotQ391171e-74TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0E0KTC81e-172A0A0E0KTC8_ORYPU; Uncharacterized protein
STRINGOPUNC04G17930.11e-172(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-50Trihelix family protein