PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538986.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 161aa    MW: 17803.1 Da    PI: 9.1276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538986.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-2332120181
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                        f+kv tpsdv+k++rlv+pk++ae++         ++ ++ l +ed +g   +W+++++y+ +s++yv+tkGW+++ ++++L +gD+v 
  KN538986.1_FGP011  32 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpaARTSPAGTVLCFEDARGgdSTWRFRYSYWSSSQSYVITKGWSRYFRDKRLAAGDTVQ 120
                        99***************************999445557789*****99999***********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2926121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2428121IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-1731119No hitNo description
SMARTSM010193.3E-1532146IPR003340B3 DNA binding domain
PfamPF023627.9E-2132121IPR003340B3 DNA binding domain
PROSITE profilePS5086310.43332134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MATIVAWESR NQLQGGGGGH GGGGGERREY MFEKVVTPSD VGKLNRLVVP KHYAEKYFPL  60
GPAARTSPAG TVLCFEDARG GDSTWRFRYS YWSSSQSYVI TKGWSRYFRD KRLAAGDTVQ  120
LPPSRPVVDE EEAACGRRCL RLFGVDLQLR ADASPALDLQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-372912511104DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538986.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006161e-164AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12.
GenBankAP0011291e-164AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149621e-164AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankKC0191721e-164KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642534.12e-84B3 domain-containing protein Os06g0107800
SwissprotQ5VS552e-85Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A0E0PSH54e-83A0A0E0PSH5_ORYRU; Uncharacterized protein
TrEMBLA0A0K0K5144e-83A0A0K0K514_ORYSI; Insect-resistance protein
STRINGORUFI06G00530.17e-84(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-40related to ABI3/VP1 1