PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538987.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HRT-like

Protein Properties

Length: 609aa MW: 67341.9 Da PI: 9.7488

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538987.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.3	2.7e-18	302	331	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+ledGs C ++Pv+gRKRCe HKG+R KN538987.1_FGP009 302 VCGVMLEDGSSCLDHPVQGRKRCELHKGRR 331 7****************************9 PP
2	HRT-like	52.7	6.9e-17	572	601	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+Ck+qP+ gRKRC+ HKG+R KN538987.1_FGP009 572 ICGARASDGSPCKNQPIAGRKRCAMHKGQR 601 8****************************9 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MPAVSAAVPA RLKREDYPRT KHDSLFSPWK DHAAGKEGVQ RYRVLNLPEN FPGLYELGVA 60 RASDEGIRAA RRWNGSGGGG VVVVYLGQAD SVRARLQQYG RTGSHLDAGN PPPSAGEAET 120 NTRATGNGLF REVFVRGYSL VFRCALMGNK QEAEKTEARL LRVFDYAWNK LQNGVLRREE 180 ILIKLEQGAV NNRSSLLSRV RHFKQEVFRE RAGIKISRNG SVDVSSGIMK NMLPRIRTFV 240 GFRPQLVNSG DNVDKEIGIR WKNTSEGNSY GKQARRSSEG YKVKRVNVIK RRTMPEQDSN 300 DVCGVMLEDG SSCLDHPVQG RKRCELHKGR RLGRITVNPK GSSCSYSCQV EISVVESIPP 360 LTENESESDQ AQQTNELLSK LLPATVKESS RPRYSFEAKE MKTGEAPIEN GKHDTSEVID 420 ICEAKKSDNS ACTNIVISGS KKCQLHNGCK AEEFVSSRVI DLLQNEEKVH SKLSGEEISH 480 GKYQSQENQP SGRMWFELLK LQNSTSTLSS KGQGRQRRVT GNVTAICEAL TDNRCRETIP 540 MAGRERCDAH EGIKVTDASS VPFSGSSGWP SICGARASDG SPCKNQPIAG RKRCAMHKGQ 600 RACRTPSID

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MPAVSAAVPA RLKREDYPRT KHDSLFSPWK DHAAGKEGVQ RYRVLNLPEN FPGLYELGVA  60
RASDEGIRAA RRWNGSGGGG VVVVYLGQAD SVRARLQQYG RTGSHLDAGN PPPSAGEAET  120
NTRATGNGLF REVFVRGYSL VFRCALMGNK QEAEKTEARL LRVFDYAWNK LQNGVLRREE  180
ILIKLEQGAV NNRSSLLSRV RHFKQEVFRE RAGIKISRNG SVDVSSGIMK NMLPRIRTFV  240
GFRPQLVNSG DNVDKEIGIR WKNTSEGNSY GKQARRSSEG YKVKRVNVIK RRTMPEQDSN  300
DVCGVMLEDG SSCLDHPVQG RKRCELHKGR RLGRITVNPK GSSCSYSCQV EISVVESIPP  360
LTENESESDQ AQQTNELLSK LLPATVKESS RPRYSFEAKE MKTGEAPIEN GKHDTSEVID  420
ICEAKKSDNS ACTNIVISGS KKCQLHNGCK AEEFVSSRVI DLLQNEEKVH SKLSGEEISH  480
GKYQSQENQP SGRMWFELLK LQNSTSTLSS KGQGRQRRVT GNVTAICEAL TDNRCRETIP  540
MAGRERCDAH EGIKVTDASS VPFSGSSGWP SICGARASDG SPCKNQPIAG RKRCAMHKGQ  600
RACRTPSID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538987.1_FGP009

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102792	0.0	AK102792.1 Oryza sativa Japonica Group cDNA clone:J033107P15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644815.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A0E0AM07	0.0	A0A0E0AM07_9ORYZ; Uncharacterized protein
TrEMBL	Q8H2Y0	0.0	Q8H2Y0_ORYSJ; Os07g0586700 protein
STRING	OGLUM07G20190.1	0.0	(Oryza glumipatula)
STRING	OS07T0586700-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-63	effector of transcription2