PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538988.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 223aa    MW: 24454 Da    PI: 9.4455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538988.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-1388135355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  KN538988.1_FGP001  88 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 135
                        67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.02585134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1887155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1788146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1088135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-1390139No hitNo description
SMARTSM003536.1E-1591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEVDAAAAA AMVQQQQQQY  60
AAAAGEHRPR KAAKAPAAAA SRPASQNQEH ILAERKRREK LSQRFIALSK IVPGLKKMDK  120
ASVLGDAIKY VKQLQDQVKG LEEEARRRPV EAAGLIHCEN RKGALITALS EVETIGLTIM  180
NTNVLPFTSS SLDITIMATA GENFSLSVKD IVKKLSQAFK LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1490144963Transcription factor MYC2
5gnj_B3e-1490144963Transcription factor MYC2
5gnj_E3e-1490144963Transcription factor MYC2
5gnj_F3e-1490144963Transcription factor MYC2
5gnj_G3e-1490144963Transcription factor MYC2
5gnj_I3e-1490144963Transcription factor MYC2
5gnj_M3e-1490144963Transcription factor MYC2
5gnj_N3e-1490144963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19398ERKRRE
29499RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538988.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205391e-127AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690046.11e-117PREDICTED: transcription factor bHLH18-like
SwissprotQ1PF171e-34BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A446R7L71e-109A0A446R7L7_TRITD; Uncharacterized protein
STRINGOPUNC03G29750.33e-87(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-29bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]