PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538990.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 204aa    MW: 21037.1 Da    PI: 8.1436
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538990.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.5e-302103197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+pe +r+++++sl+yeA  r+ +Pv+Gavg+++++++ l
  KN538990.1_FGP001   2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPEAQRPALFQSLLYEAAGRTINPVHGAVGLLWTGNWPL 93 
                        6*********************9998656778************************************************************ PP

             DUF260  88 eqlkaelall 97 
                        +q+++e++l+
  KN538990.1_FGP001  94 CQAAVETVLR 103
                        ****999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2121107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-252101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPEAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLWTGN WPLCQAAVET VLRGGAIGPL PELGGACGGA  120
GGDLYGAAKR NGGWSTFSTA KRVRKAEVPE APSCDLGLCL SPGSPPAVGE RKPALRPGTP  180
SMSSDESGTT TGGERDPVLL NLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538990.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4059030.0CU405903.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S102O12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629353.11e-145LOB domain-containing protein 37
SwissprotQ9FN113e-69LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0D3FKA51e-144A0A0D3FKA5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NX241e-144A0A0E0NX24_ORYRU; Uncharacterized protein
TrEMBLI1PCP21e-144I1PCP2_ORYGL; Uncharacterized protein
TrEMBLQ6AV611e-144Q6AV61_ORYSJ; Expressed protein
STRINGORUFI03G23490.11e-145(Oryza rufipogon)
STRINGOS03T0445700-011e-145(Oryza sativa)
STRINGORGLA03G0213800.11e-145(Oryza glaberrima)
STRINGOBART03G22820.11e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-70LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]