PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538997.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 138aa    MW: 15192.1 Da    PI: 9.4079
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538997.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.41.7e-192770141
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE- CS
               WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers 41
                       ldDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+ + +
  KN538997.1_FGP002 27 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNASKQEQNA 70
                       59***************************98999*****96654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-191470IPR003657WRKY domain
SuperFamilySSF1182901.44E-172070IPR003657WRKY domain
PROSITE profilePS5081116.82272IPR003657WRKY domain
SMARTSM007745.1E-202785IPR003657WRKY domain
PfamPF031067.3E-172870IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MINICRKTLP KWSKQVKVRS VQDVGPLDDG FSWRKYGQKD ILGAKYPRAY FRCTHRHTQG  60
CNASKQEQNA VSVAFTSMAV VNASTSSPFV SPATSDCQVS YELGGGSMAG VRNVPDVELA  120
SKTNSSMGDD NYKYSSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-151570259Disease resistance protein RRS1
5w3x_D4e-151570259Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538997.1_FGP002
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032129e-94AP003212.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05.
GenBankAP0032949e-94AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04.
GenBankAP0149579e-94AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY6769269e-94AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
GenBankCP0126099e-94CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632319.18e-79probable WRKY transcription factor 53
TrEMBLB9EYE92e-81B9EYE9_ORYSJ; Uncharacterized protein
STRINGORGLA01G0204900.12e-79(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-25WRKY family protein