PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538998.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20487.4 Da    PI: 9.6279
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538998.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.4e-1753881045
                       HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       +vtf+kRr+g++ KA+ELS+L++a vav++fs+ ++
  KN538998.1_FGP005 53 KVTFTKRRAGLFRKASELSILTGAAVAVLVFSKANR 88
                       7*******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-123995IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.8064796IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-1451100IPR002100Transcription factor, MADS-box
PfamPF003192.4E-175390IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-75873IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-77394IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MATQDEVVAL AHPQYRAARM VVGVSQEHKL EENPRSWPHG RGEGKEERLT GDKVTFTKRR  60
AGLFRKASEL SILTGAAVAV LVFSKANRPY ALADPSSSLV DDAVLRSRCY APALGVHDCE  120
PEALRRAADE AKVEVARLRD VVGRWFWWWW EATNVEALGE AELPEFTRVL GRVRAAVVRR  180
RAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538998.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036190.0AP003619.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0577H07.
GenBankAP0043250.0AP004325.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1230_H04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0AA518e-74A0A0E0AA51_9ORYZ; Uncharacterized protein
STRINGOGLUM06G17270.11e-74(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1817844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-13AGAMOUS-like 61