PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538998.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 180aa    MW: 19904.6 Da    PI: 8.7518
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538998.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.3e-251966249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ +
  KN538998.1_FGP008 19 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 66
                       8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.84E-261081IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-311069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.7451070IPR002100Transcription factor, MADS-box
CDDcd002655.18E-341184No hitNo description
PRINTSPR004041.6E-211232IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-213247IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-214768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVRSRGRPSL GRQRIEIRRI DNSGRRQVTF SKRRNGLFKK ASELSTLCGA SVAVVAFSSA  60
GNVFAFGQPT VDAVLRRFDP LHADPAPAAV EDGGGDVVVA DPEELDALRR AEEQTKAQVA  120
AEQARMRDVG DKVTQAMAGR PLWWEADVEA LGEAELPEFV RALERLRDSV CYYRMLLKPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-151088178Myocyte-specific enhancer factor 2B
1tqe_Q2e-151088178Myocyte-specific enhancer factor 2B
1tqe_R2e-151088178Myocyte-specific enhancer factor 2B
1tqe_S2e-151088178Myocyte-specific enhancer factor 2B
6c9l_A2e-151088178Myocyte-specific enhancer factor 2B
6c9l_B2e-151088178Myocyte-specific enhancer factor 2B
6c9l_C2e-151088178Myocyte-specific enhancer factor 2B
6c9l_D2e-151088178Myocyte-specific enhancer factor 2B
6c9l_E2e-151088178Myocyte-specific enhancer factor 2B
6c9l_F2e-151088178Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538998.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642334.12e-91agamous-like MADS-box protein AGL62
TrEMBLA0A0E0AA571e-106A0A0E0AA57_9ORYZ; Uncharacterized protein
STRINGOGLUM06G17310.11e-107(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-17AGAMOUS-like 61