PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539001.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 131aa    MW: 14929.6 Da    PI: 10.2203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539001.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15248455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av Y+k+Lq
  KN539001.1_FGP011  2 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILGDAVTYVKELQ 48
                       5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.533147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-20257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-13248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.27E-14352No hitNo description
SMARTSM003531.9E-16453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILGDA VTYVKELQEK VKTLEEEDGG  60
GRPAAMVVRK SSCSGRVPEI EVRVWERSVL VRVQCGNSRG LLLRKKYWCT CVLCSDLQGT  120
IHGIKKILKN H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-16157763Transcription factor MYC2
5gnj_B4e-16157763Transcription factor MYC2
5gnj_E4e-16157763Transcription factor MYC2
5gnj_F4e-16157763Transcription factor MYC2
5gnj_G4e-16157763Transcription factor MYC2
5gnj_I4e-16157763Transcription factor MYC2
5gnj_M4e-16157763Transcription factor MYC2
5gnj_N4e-16157763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611ERKRRE
2712RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539001.1_FGP011
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139053e-69AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7318873e-69AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149683e-69AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618735.15e-60transcription factor NAI1 isoform X2
SwissprotQ9T0723e-25BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0P0YCR01e-58A0A0P0YCR0_ORYSJ; Os12g0632600 protein
STRINGOS12T0632600-002e-59(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-27bHLH family protein