PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539003.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 197aa    MW: 21156.1 Da    PI: 6.3354
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539003.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-09948140
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                       k ien+ +r+ tf +Rr g+  K +   +LC++e+++i +
  KN539003.1_FGP003  9 KLIENEKKRKATFKNRRDGLKQKVSQFATLCGVEALLICV 48
                       569**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.297146IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-6160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-14151IPR002100Transcription factor, MADS-box
PfamPF003192.5E-131148IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPRTKLVLKL IENEKKRKAT FKNRRDGLKQ KVSQFATLCG VEALLICVPG QHPPCIAYQM  60
PPPCLAYQMP PPPPPSLAAA PFDQCMSGTG FMDSSNPYAA HIMHGGSTAA GLLDDHGQIF  120
SAGAGYDDDD ILGHGFAFAA GTGYDLEPRM TTADVWPMNT LNNIPNDGSI GFQLQNDLKW  180
MFPGGSNGSN LQGGFQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539003.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033800.0AP003380.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0497A05.
GenBankAP0065310.0AP006531.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1417F08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FX922e-84A0A0E0FX92_ORYNI; Uncharacterized protein
TrEMBLB9EVG42e-85B9EVG4_ORYSJ; Uncharacterized protein
TrEMBLQ8LIX02e-84Q8LIX0_ORYSJ; Os01g0906300 protein
STRINGONIVA01G46080.13e-85(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.32e-08M-type_MADS family protein