PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539005.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 181aa    MW: 18860.4 Da    PI: 9.9829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539005.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.7e-213283156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  KN539005.1_FGP012 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                       68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.84E-193290No hitNo description
PfamPF008471.0E-143282IPR001471AP2/ERF domain
SMARTSM003802.2E-373396IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-233391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-323390IPR001471AP2/ERF domain
PROSITE profilePS5103224.3683390IPR001471AP2/ERF domain
PRINTSPR003672.2E-113445IPR001471AP2/ERF domain
PRINTSPR003672.2E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAPRAATVEK VAVAPPTGLG LGVGGGVGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQSMVDCG GSPSSNSTVD TGGGGVQTPM  120
QAMPLPPTLD LDLFHRAAAV TAVAGTGVRF PFRGYPVAPC ERRKSLVNSF SAEGEIHLGI  180
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-232995168ATERF1
3gcc_A5e-232995168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539005.1_FGP012
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0368830.0AB036883.1 Oryza sativa mRNA for osERF3, complete cds.
GenBankAB0371830.0AB037183.1 Oryza sativa osERF3 mRNA for ethylene responsive element binding factor3, complete cds.
GenBankAK0613800.0AK061380.1 Oryza sativa Japonica Group cDNA clone:006-304-H01, full insert sequence.
GenBankAP0032990.0AP003299.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0699H05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY8313930.0AY831393.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 2 (BIERF2) mRNA, complete cds.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8327230.0CT832723.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN041E05, full insert sequence.
GenBankKM2628350.0KM262835.1 Oryza sativa Indica Group cultivar Nagina 22 Aptella 2-like transcription factor (AP37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622082.11e-108ethylene-responsive transcription factor 8
SwissprotQ9LW493e-35ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A0E0C8U01e-109A0A0E0C8U0_9ORYZ; Uncharacterized protein
STRINGOMERI01G30200.11e-109(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-23erf domain protein 9