PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539042.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 57aa MW: 6328.37 Da PI: 8.3312

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539042.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36	1.7e-11	14	50	1	36
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRt 36 +g+WT++Ed+llvd+v+ G+g+W++ ++ +R+ KN539042.1_FGP002 14 KGPWTPDEDKLLVDYVQANGSGNWRLLPKLAVcANRS 50 79************************99988766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-12	5	51	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.771	9	57	IPR017930	Myb domain
SuperFamily	SSF46689	2.3E-10	9	54	IPR009057	Homeodomain-like
Pfam	PF00249	6.2E-10	14	51	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-5	16	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
MGRTPCCDSK VLKKGPWTPD EDKLLVDYVQ ANGSGNWRLL PKLAVCANRS AFLCFVD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539042.1_FGP002

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL663006	6e-68	AL663006.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence.
GenBank	AP014960	6e-68	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	6e-68	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636233.1	2e-24	transcription factor MYB41
Swissprot	Q9S9Z2	4e-17	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0E0H3J0	7e-23	A0A0E0H3J0_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PBZ3	7e-23	A0A0E0PBZ3_ORYRU; Uncharacterized protein
TrEMBL	A2XVU9	4e-23	A2XVU9_ORYSI; Uncharacterized protein
TrEMBL	A3AVV6	5e-23	A3AVV6_ORYSJ; Uncharacterized protein
TrEMBL	I1PNC1	5e-23	I1PNC1_ORYGL; Uncharacterized protein
TrEMBL	Q7XMK6	5e-23	Q7XMK6_ORYSJ; OSJNBb0039L24.12 protein
STRING	OMERI04G16050.1	2e-25	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5409	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-19	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]