PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539043.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 306aa    MW: 32166.6 Da    PI: 6.1643
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539043.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.6e-1575125155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  KN539043.1_FGP006  75 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 125
                        89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.453140IPR001471AP2/ERF domain
SMARTSM003806.3E-4546IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-61041IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-81040IPR001471AP2/ERF domain
CDDcd000181.04E-2575135No hitNo description
SuperFamilySSF541711.05E-1875135IPR016177DNA-binding domain
PfamPF008475.7E-1175125IPR001471AP2/ERF domain
PROSITE profilePS5103216.48976133IPR001471AP2/ERF domain
SMARTSM003803.0E-3376139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1776133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAAFVTTEFA GGFDTAHAAA RAYDRAAIKF RGVEADINFS LEDYEDDLKQ MSNLTKEEFV  60
HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEE EAARAYDRAA  120
IKCNGKDAVT NFDPSIYAGE FEPPAAATGD AAEHNLDLSL GSSAGSKRGN LDGGGDDEIT  180
GGGGGGGAGS DQGVPMAFDL DWQTAAARST KAKFLSNGDP GTAGGLSLTI GAGMAGHWPP  240
QQQQGWGNAS GMSWPLPPHP PPPPTNAAAA ATATAAAASS RFPPYIATQA STWLQKNGFH  300
SLTRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539043.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.11e-157AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ91e-160APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0DJ681e-176A0A0E0DJ68_9ORYZ; Uncharacterized protein
STRINGOMERI04G22440.31e-178(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-73AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]