PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539044.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 195aa    MW: 20832.7 Da    PI: 7.7679
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539044.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.43.7e-10167187121
                        ---SS-EEEEEEE--TT-SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                        ldDgy+WrKYGqK+vk+s +p
  KN539044.1_FGP009 167 LDDGYKWRKYGQKVVKNSLHP 187
                        59****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-12152187IPR003657WRKY domain
SuperFamilySSF1182904.71E-9159187IPR003657WRKY domain
PROSITE profilePS5081111.968162187IPR003657WRKY domain
PfamPF031061.8E-6168187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEGSQLETAC LPAALYAPLC PYTPPSPPSF LAPLPSLQHK LPQLPQLVHD HAAAAAGTNH  60
GVMFSSDHGC LYPLLPGIPF CLDSGCGAAA CDDDKPAGFA HLGSAEADTS AAAAARVDSE  120
IVAAATATTC HGPNSWWKGT EKGKMKVRRK MREPRFCFQT RSDVDVLDDG YKWRKYGQKV  180
VKNSLHPSLS GVRFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539044.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8319460.0CT831946.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037J04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635033.11e-118probable WRKY transcription factor 12
TrEMBLA0A0D9ZNT31e-119A0A0D9ZNT3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H3T81e-118A0A0E0H3T8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PC911e-118A0A0E0PC91_ORYRU; Uncharacterized protein
TrEMBLB8ASM91e-118B8ASM9_ORYSI; Uncharacterized protein
TrEMBLQ01J251e-118Q01J25_ORYSA; OSIGBa0101C23.2 protein
STRINGOGLUM04G20470.11e-119(Oryza glumipatula)
STRINGORUFI04G22110.11e-119(Oryza rufipogon)
STRINGONIVA04G18780.11e-119(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-28WRKY family protein