PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539046.1_FGP017

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 245aa MW: 27500 Da PI: 4.3833

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539046.1_FGP017	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.7e-15	55	98	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT +Ed+ lv++++ +G g+W++ ar g Rt++++k++w++ KN539046.1_FGP017 55 RGPWTVDEDLTLVNYIADHGEGRWNSLARAAG--RTDNEIKNYWRT 98 89***************************8..********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.761	50	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-18	51	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.16E-13	51	105	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-12	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-13	55	98	IPR001005	SANT/Myb domain
CDD	cd00167	6.20E-11	57	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MAASQRSRST AAQLDVDDQA AADQLMTMMR RPAAALQDEA AAEEEAADLQ LELRRGPWTV 60 DEDLTLVNYI ADHGEGRWNS LARAAGRTDN EIKNYWRTRV QKHAKQLNCD ANSARFKDAM 120 RYLWMPRLAD ASQLGDHHGY NGTTAMGDAH GMPVMTSSSS DSFATSESYD GGLYANVQDN 180 EMVNGGDYYW MQGANQGFCS NYESEQQLHP HEHSQFQDPD LVGWVQGFSE GISENFWSLE 240 DIWKM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539046.1_FGP017

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL928753	0.0	AL928753.3 Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CU406184	0.0	CU406184.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618854.1	1e-152	transcription factor JAMYB-like
Swissprot	Q2QZJ8	3e-57	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	I1R796	1e-153	I1R796_ORYGL; Uncharacterized protein
STRING	ORGLA12G0140200.1	1e-154	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-34	myb domain protein 78

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]