PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539052.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 134aa    MW: 14423.1 Da    PI: 4.6308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539052.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000363961854
                       HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       ++f+eL ++l +    + ++ +K++iL  A + +++L
  KN539052.1_FGP012 63 KRFNELSSILEPG---KPPRADKVSILSDAARLLSQL 96
                       689*********8...899**************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.4E-762121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.83E-663121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSCGGAGQSG WLLEYGLVEE EIQGSDFIYM VDDPAAVSSV LLGFDVPRKE DGSGGQDNSA  60
SKKRFNELSS ILEPGKPPRA DKVSILSDAA RLLSQLRAEA QKLKSSNESL QDSIKSLKRT  120
VHVDDSRVVS DVNP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539052.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1110163e-84AC111016.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1651_D06, complete sequence.
GenBankAP0149613e-84AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-84CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637537.16e-72transcription factor ILR3
TrEMBLA0A0E0A0512e-77A0A0E0A051_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DSC42e-77A0A0E0DSC4_9ORYZ; Uncharacterized protein
STRINGOGLUM05G19990.13e-78(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.12e-20bHLH family protein