PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539060.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 250aa    MW: 27071.7 Da    PI: 6.6903
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539060.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_179.15.4e-25127189163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+eL++eN+aL++el++lkk ++ +++e+
  KN539060.1_FGP011 127 ERELKRERRKQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAEN 189
                        89*********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165969.0E-78104No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-18126186No hitNo description
PfamPF001702.2E-22127189IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-22127191IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.553129192IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.75E-12130185No hitNo description
CDDcd147024.41E-20132182No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDQLERATGD SGSEESSDTR DDDTDHKDSS APKKRKSGNT SAEGEPSQAT LVPYAAVESP  60
YPLKGRSASK LPVSAPGRAA LPNATPNLNI GIDLWSTPPA LAVPAGQGEA SPGLALARRD  120
GVAHLDEREL KRERRKQSNR ESARRSRLRK QQECEELARK VAELTTENSA LRSELDQLKK  180
ACEDMEAENT RLMGDKAQYK GPTVTTTLGM SIDSSKTQPH DDEGQLHKNT NNNSNGNYVG  240
GSHKPEANSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149RRSRLRK
2143150RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539060.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891790.0AK289179.1 Oryza sativa Japonica Group cDNA, clone: J100028J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644731.11e-175DNA-binding protein EMBP-1
SwissprotP250328e-55EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLB9FW501e-174B9FW50_ORYSJ; Uncharacterized protein
STRINGOBART07G07070.11e-175(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-24basic region/leucine zipper transcription factor 16