PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539071.1_FGP015
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 238aa    MW: 25749.3 Da    PI: 10.8691
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539071.1_FGP015genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA35.33.7e-11981213558
          CBFB_NFYA  35 rkpylheSRhkhAlrRpRgsgGrF 58 
                          pylheSRh+ A++R+Rg+gGrF
  KN539071.1_FGP015  98 SVPYLHESRHRPAMKRARGTGGRF 121
                        579********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020451.4E-946121IPR001289Nuclear transcription factor Y subunit A
SMARTSM005210.006371124IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115214.318100124IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQSRGAAAEA TAGRSRGGCR RSEQQQQLLR AAEAPREEAR GDSFRRTVDG PMRSTLTFDN  60
NHSVVPSHNI DYGQPMACIP YPYNDSGSGV WASYSSRSVP YLHESRHRPA MKRARGTGGR  120
FLNTKQLQLQ HQSHTTSTKT TTDSQNSSGS VHLRLGGGAI GDQTPFPFKA MDSQANIKRA  180
AASASTFTVT SAAQKDDAFF DRHGHHLSSF SGHFSQASAQ GGVGSMHNGS QQRVPAMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105114RHRPAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539071.1_FGP015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055380.0AP005538.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0013K01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623432.15e-84nuclear transcription factor Y subunit A-4
TrEMBLQ6YZ661e-130Q6YZ66_ORYSJ; Uncharacterized protein OSJNBb0013K01.26
STRINGORUFI02G36020.11e-126(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.25e-08nuclear factor Y, subunit A3