PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539075.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 241aa MW: 27268.8 Da PI: 4.4451

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539075.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.9e-09	86	114	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT++Ed++lv+ v+++G ++W+ Ia+ KN539075.1_FGP006 86 KGPWTEQEDLQLVCTVRLFGERRWDFIAK 114 79*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.108	81	114	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.2E-7	82	115	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-6	82	115	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-7	86	114	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-5	88	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MESSVPMIMA DKKASAFHIR RTGKNIWKKP DRDFSKIPFP MAGVHQGSHP EAGANKHTEV 60 EEEQEDWLPA DTRVIDMVTV REETRKGPWT EQEDLQLVCT VRLFGERRWD FIAKVSETPS 120 MIIGIEEQEL HGGSGCITSI MKSTPVDMDG YPMDQIWMEI EAPNVLPGPC FDEAKDSASN 180 SLSGPLLPYP MWDYYCPETC LRMDDEIKSL MQHGYSISTW VLSTALYKVE EYAGGTDNTV 240 Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539075.1_FGP006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	1e-154	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBank	CT833282	1e-154	CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877776.1	3e-62	myb-related protein MYBAS2 isoform X2
Swissprot	Q4JL76	1e-63	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	A3CIJ4	7e-71	A3CIJ4_ORYSJ; Uncharacterized protein
STRING	ORGLA12G0141600.1	3e-62	(Oryza glaberrima)
STRING	ORGLA12G0206100.1	3e-62	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-13	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]