PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539079.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 126aa    MW: 14784.2 Da    PI: 11.6326
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539079.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.87e-11106126222
                        --SS-EEEEEEE--TT-SS-E CS
               WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                         D y+WrKYGqK++kgs++pr
  KN539079.1_FGP004 106 ADDYSWRKYGQKPIKGSPYPR 126
                        69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-587103IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-1092126IPR003657WRKY domain
PROSITE profilePS5081113.092100126IPR003657WRKY domain
SuperFamilySSF1182902.35E-8101126IPR003657WRKY domain
PfamPF031069.8E-7107126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MPQQHPQPPA GSRLLDAVPL FVVVLLAAHV LALYFWLYNE SLGGKQRRVH RSNRELREQD  60
FTSRKLRLFI IVAEFVFPFV LWKASWRARR RIRVPAISSR NADIPADDYS WRKYGQKPIK  120
GSPYPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539079.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1105879e-63AK110587.1 Oryza sativa Japonica Group cDNA clone:002-168-F03, full insert sequence.
GenBankAP0055149e-63AP005514.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24.
GenBankAP0149589e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY6769239e-63AY676923.1 Oryza sativa (indica cultivar-group) transcription factor WRKY42 (WRKY42) mRNA, complete cds.
GenBankCP0126109e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKM5050459e-63KM505045.1 Oryza sativa Japonica Group WRKY transcription factor (WRKY42) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624842.11e-22WRKY transcription factor WRKY51-like
STRINGOGLUM02G16050.14e-22(Oryza glumipatula)
STRINGORUFI02G16390.15e-22(Oryza rufipogon)
STRINGOS02T0462800-015e-22(Oryza sativa)
STRINGONIVA08G14000.14e-22(Oryza nivara)
STRINGORGLA02G0138400.14e-22(Oryza glaberrima)
STRINGOBART02G15990.14e-22(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-18WRKY DNA-binding protein 21