PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539084.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 667aa    MW: 72851.9 Da    PI: 6.827
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539084.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28210263155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  KN539084.1_FGP002 210 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 263
                        79*******************.********************************8 PP
2Response_reg76.51e-25211291109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +
  KN539084.1_FGP002  21 VLAVDDDPVCLKVLETLLRRCQY-HVTSTNQAITALKLLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGI 110
                        799********************.***************99999********************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +eel++
  KN539084.1_FGP002 111 THGACDYLLKPVRIEELRN 129
                        *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.2E-2131666IPR017053Response regulator B-type, plant
SuperFamilySSF521721.31E-3418145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.8E-4118147No hitNo description
SMARTSM004483.8E-3019131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.27520135IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-2321130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.62E-2522134No hitNo description
PROSITE profilePS5129411.351207266IPR017930Myb domain
SuperFamilySSF466891.38E-19208267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-30208268IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25210263IPR006447Myb domain, plants
PfamPF002491.2E-6212262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEERKGLMGR ERDQFPVGMR VLAVDDDPVC LKVLETLLRR CQYHVTSTNQ AITALKLLRE  60
NRDMFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSVN GETKTVMKGI THGACDYLLK  120
PVRIEELRNI WQHVVRRKFG NRERNNLDFS KECNKPQSAD TDHGPYQPTC GSSDQNGRSS  180
RKRKELHGED DDEGDDNDYQ ENDEPSAAKK PRVVWSVELH RKFVAAVNQL GIDKAVPKRI  240
LELMNVEKLT RENVASHLQK YRLYLKRLSA VASQQASIVA AFGGRDPSFL HMGAFEGLQS  300
YQTFAPSAAL PSFNPHGLLT RTSAAAAFGL QELAAPSSTI QTATGNVTIG HCLEENQQAN  360
LAQGLTAAIG QPQLQQNWIH QESNGLSDVF SGSALTNTLS STLQRVPSSS LPPQELLECK  420
QAKVSMQTSI RIPPSSSALL ERTLGVSTNL GDSSISQQGA LPIDGGFSAD RLPLHSSFDG  480
AVATKLDTSL AASQREIGQQ GKFSVSMLVS PSDNLALAKN AKTGASSSGS TIILPLDTAR  540
HSDYLHFGGA SNSLQKMDGQ KQDHIQSSNI VWSSMPSTQL PTDTQIHNTQ NQRLDSGSFN  600
HNIGAHLADQ TNASASILPQ MKFDTRTSEE KMKQKNTYDL GSSKLQGGFN SSGCNFDGLL  660
NSIIKVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-24206269164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539084.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011650.0AK101165.1 Oryza sativa Japonica Group cDNA clone:J033028D10, full insert sequence.
GenBankAK1029590.0AK102959.1 Oryza sativa Japonica Group cDNA clone:J033115H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640894.10.0two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0D3GDJ10.0A0A0D3GDJ1_9ORYZ; Two-component response regulator
TrEMBLA0A0E0A5X30.0A0A0E0A5X3_9ORYZ; Two-component response regulator
STRINGOGLUM06G05540.10.0(Oryza glumipatula)
STRINGOBART06G05360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-111response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]