PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539088.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 470aa    MW: 52378.2 Da    PI: 8.7968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539088.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-18330417196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k++++s+v++  +l lp +f++ h  + +++ +++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l + ++f  
  KN539088.1_FGP001 330 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PKEYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF-- 413
                        89*********************8885.3.36679***************..555444..***********************9876777.. PP

                        EEEE CS
                 B3  93 vvkv 96 
                        ++ +
  KN539088.1_FGP001 414 KIYI 417
                        5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1370.107.5E-34101206IPR004088K Homology domain, type 1
SMARTSM003227.8E-8104204IPR004087K Homology domain
CDDcd023955.47E-39109209No hitNo description
PfamPF000133.0E-5109148IPR004088K Homology domain, type 1
SuperFamilySSF547914.37E-27111210IPR004088K Homology domain, type 1
Gene3DG3DSA:2.40.330.105.3E-21322419IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-24323419IPR015300DNA-binding pseudobarrel domain
CDDcd100174.50E-27328419No hitNo description
SMARTSM010192.5E-23330421IPR003340B3 DNA binding domain
PfamPF023629.3E-17330418IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464330421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDGLDWIAVV VKQAVLGGVV AGASEAGAVH AEIMRVSGMF RQPGVGDFER AQPASPNEMH  60
PSHIVPNFCG NAFGPWNGMR PERVSFSQGP GWQGAPQSPS SYIVKKILRL EIPTDAYPNF  120
NFIGRLLGPR GNSLKRIEAS TGCRVFIRGK GSIKDPNKEE QLKGRAGYEH LDDPLHILIE  180
AELPANVIDA RLAKAQEILE ELLKPVDLGI KKMSKSLLEA ARLQKVIAAT YATREGFGLL  240
STRASPKPRK KFEVGATEVR RSSRARNSVS YKENFDELDS FLRRRRGSRI RNTEQGREYT  300
GRVASYEQQQ RAFKKAERLQ NSLDPENPSF VKTMVRSHVS SCFWLGLPTR FCKLHLPPKE  360
YKMVLEDEEG GEFDSVYIGN RTGLSGGWRG FAMHHNLEDG DSLVFELAEP DRFKIYIIKA  420
VDEDVNESEP ADEEADGGKD TSTEDAAEQD DSPNAEPLKG AKRRKLRGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4jvh_A3e-276523126199Protein quaking
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457463LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539088.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639491.11e-170B3 domain-containing protein Os05g0481400 isoform X2
SwissprotQ5KQI41e-171Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A0E0G9E41e-170A0A0E0G9E4_ORYNI; Uncharacterized protein
TrEMBLB8AZB11e-170B8AZB1_ORYSI; Uncharacterized protein
STRINGONIVA02G25740.11e-171(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-40B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]