PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539095.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 230aa    MW: 24948 Da    PI: 4.4087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539095.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.96.5e-16681072159
                        -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         r+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  KN539095.1_FGP006  68 RRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 107
                        69******998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.5E-1214108IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-1667109IPR003657WRKY domain
PfamPF031063.9E-1467107IPR003657WRKY domain
SuperFamilySSF1182903.01E-1367109IPR003657WRKY domain
PROSITE profilePS5081119.2969109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAAGEEVMDR STSAEDGYCS AGTDSPRAES VDEQGAAEES SPPRGGQKRE LPSPSASPSS  60
PLPPAAKRRG YYRCSSSKGC PARKQVERSR ADPTVLLVTY SFEHNHPWPQ PKSSSCHASK  120
SSPRSTAPKP EPAADGQQPE PAENESSASA ELEVPEPEPE QEPESEPVVK QEEEQKEEQK  180
AVVEPAAVTT TVAPAPAVEE EDENFDFGWI DQYHPTWHRS SKYKGTMLDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539095.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankEF1436110.0EF143611.1 Oryza sativa (indica cultivar-group) defense-responsive protein WRKY13 (WRKY13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647591.16e-93probable WRKY transcription factor 65
TrEMBLA0A0D9YEZ82e-92A0A0D9YEZ8_9ORYZ; Uncharacterized protein
STRINGOGLUM01G35080.13e-93(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-20WRKY DNA-binding protein 65