PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539099.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 209aa    MW: 22745.7 Da    PI: 4.882
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539099.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY505.9e-165692237
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37
                        D y WrKYGqK + g++fpr+YYrC +  gC+++k+
  KN539099.1_FGP006 56 GDAYPWRKYGQKGILGTRFPRNYYRCGQIlGCTARKQ 92
                       59*************************999******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.58E-145392IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-135592IPR003657WRKY domain
SMARTSM007747.3E-955104IPR003657WRKY domain
PROSITE profilePS5081115.7785792IPR003657WRKY domain
PfamPF031065.0E-135792IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAKGGGAGSS AGVVEVILAD ISDSLSQALA SLMLRAARAD GSSRTIMLQY GDRDHGDAYP  60
WRKYGQKGIL GTRFPRNYYR CGQILGCTAR KQGYSVGIGV THRTMPAAPM AVPSALQKLE  120
QHFPAWSSDD VMMACTPSME ASSWVFIPSP ACSQSELLSE AEVPELRRVQ DAFSPDDPVE  180
VEEHKKPCDA DDEFLALQLH DSVVPDFMY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539099.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052561e-32AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149631e-32AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-32CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645532.12e-58uncharacterized protein LOC107278742 isoform X1
TrEMBLA0A0D3GQM55e-91A0A0D3GQM5_9ORYZ; Uncharacterized protein
STRINGOBART07G13300.18e-92(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.14e-12Disease resistance protein (TIR-NBS-LRR class)