PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539099.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 237aa    MW: 26064.2 Da    PI: 4.8837
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539099.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.83.4e-2663120258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                        dD y WrKYGqK++ g++f+rsYYrC++  gC+++k+v++s++dp+ +eitY g H++
  KN539099.1_FGP010  63 DDSYPWRKYGQKDILGARFARSYYRCAQMlGCTARKQVQQSDDDPSRLEITYIGLHTC 120
                        8**************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.657118IPR003657WRKY domain
SuperFamilySSF1182908.37E-2457121IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-2460120IPR003657WRKY domain
SMARTSM007745.3E-3362122IPR003657WRKY domain
PfamPF031063.2E-2463120IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLRAACDDQS LPAPPPEASL LPSYGQCVVA NSGGRSVSKR KAQRRSRADG SSRRIILELG  60
DRDDSYPWRK YGQKDILGAR FARSYYRCAQ MLGCTARKQV QQSDDDPSRL EITYIGLHTC  120
GGDRPASPAP TNPADCPRCD AATSSYRLLP SALQQKLEEH VPAASDDMMM ACTPSWLFIP  180
SPACSQSELL SEGEVPELRV VRQEPDDPVE LVEEHKKPSD ADEDSLALHD SVVPDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-16611191575Disease resistance protein RRS1
5w3x_D1e-16611191575Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539099.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052560.0AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645532.11e-134uncharacterized protein LOC107278742 isoform X1
TrEMBLA0A0E0EAX51e-154A0A0E0EAX5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I0691e-154A0A0E0I069_ORYNI; Uncharacterized protein
STRINGONIVA07G11310.11e-155(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-22WRKY DNA-binding protein 55