PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539108.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 384aa    MW: 41912.6 Da    PI: 7.4607
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539108.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.44.2e-073013302655
                        -HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  26 saeereeLAkklgLterqVkvWFqNrRake 55 
                        ++ e+  LA+ +gL+++q+++WF N+R ++
  KN539108.1_FGP006 301 QEMEKMTLAQTTGLDQKQISNWFINQRKRH 330
                        5668889********************885 PP
2ELK26.81.2e-09211232122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        +LKhqLl KY+g+Lg+L+q Fs
  KN539108.1_FGP006 211 QLKHQLLMKYGGSLGDLRQAFS 232
                        59*****************776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-1881125IPR005540KNOX1
PfamPF037908.1E-1982120IPR005540KNOX1
PROSITE profilePS512139.097211231IPR005539ELK domain
SMARTSM011884.7E-5211232IPR005539ELK domain
PfamPF037893.8E-9211232IPR005539ELK domain
Gene3DG3DSA:1.10.10.601.6E-21236263IPR009057Homeodomain-like
SMARTSM003890.002274337IPR001356Homeobox domain
SuperFamilySSF466892.48E-9299337IPR009057Homeodomain-like
PROSITE profilePS5007110.122299333IPR001356Homeobox domain
PfamPF059205.9E-10302329IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.601.6E-21302333IPR009057Homeodomain-like
CDDcd000868.11E-8304333No hitNo description
PROSITE patternPS000270308331IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARQ HGHDGHHHGG  60
GGGAAAAAAV QGQVSPAGAE AAVKAEIMSH PQYSALLAAY LGCKKVGAPP DVLTKLTAVP  120
AAPQQLDEAD GHPRRRHEPR RDDDVPDHQL DQFMTIYVTI KGQKLCNISV IYMIFLSSEI  180
KDSNCEGTGS SEEEQDTSCP EAEEIDPSDK QLKHQLLMKY GGSLGDLRQA FSKRTKKGKL  240
PKEARLKLLH WWELHYDKWP YPSVRTHIYA SHLINSTTFF CTKLDLMKMR ELLGCTCVYE  300
QEMEKMTLAQ TTGLDQKQIS NWFINQRKRH WKPTPVAGTA FPTMEAAGGG FRHSGHGGGL  360
AAAAALPLYM GWPFVVDGMY RLGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539108.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927810.0AC092781.6 Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879690.11e-179homeobox protein knotted-1-like 9
SwissprotQ10EC61e-180KNOS9_ORYSJ; Homeobox protein knotted-1-like 9
TrEMBLC7IZH70.0C7IZH7_ORYSJ; Os03g0772100 protein
STRINGORGLA03G0327300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-44KNOTTED-like from Arabidopsis thaliana