PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539108.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 272aa    MW: 28974.3 Da    PI: 5.9426
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539108.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.31.9e-061922182955
                        HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  29 ereeLAkklgLterqVkvWFqNrRake 55 
                        e+  LA+ +gL+++q+ +WF N+R ++
  KN539108.1_FGP011 192 EKMTLAQTTGLDQKQINNWFINQRKRH 218
                        6788********************885 PP
2ELK35.12.8e-12171190120
                ELK   1 ELKhqLlrKYsgyLgsLkqE 20 
                        +LKhqLlrKY+g+Lg+L+qE
  KN539108.1_FGP011 171 QLKHQLLRKYGGSLGDLRQE 190
                        59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-581121IPR005540KNOX1
PfamPF037906.7E-1082105IPR005540KNOX1
SMARTSM012561.2E-1299142IPR005541KNOX2
PfamPF037914.8E-14107140IPR005541KNOX2
PfamPF037896.5E-9171190IPR005539ELK domain
PROSITE profilePS5121310.406171191IPR005539ELK domain
SMARTSM011882.7E-5171192IPR005539ELK domain
Gene3DG3DSA:1.10.10.602.2E-14190221IPR009057Homeodomain-like
PfamPF059205.8E-10190217IPR008422Homeobox KN domain
SuperFamilySSF466892.99E-9191225IPR009057Homeodomain-like
CDDcd000862.38E-8192221No hitNo description
PROSITE profilePS500719.766192221IPR001356Homeobox domain
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELISPENPDH ISPPPLLYQL LAGPASSARQ HGHDGHHHGG  60
GGGAAAAAAV QGQVSPAGAE AAVKAEIMSH PQYSALLAAY LGCKKDAYCS MLTRYREELE  120
RPIQEAAEFF SRVETQLDSL AESNCEGTGS SEEEQDQDTS CPEEIDPSDK QLKHQLLRKY  180
GGSLGDLRQE MEKMTLAQTT GLDQKQINNW FINQRKRHWK PTPVAGTAFP TMEAAGGGFR  240
HSGHGGGLAA AAALPLYMGR PFVVDGMYRL GS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539108.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288841e-157AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBankAC1334501e-157AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBankAK1072961e-157AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
GenBankAP0149591e-157AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-157CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.11e-144homeobox protein knotted-1-like 8 isoform X1
SwissprotQ10ED21e-145KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0D3FPL01e-156A0A0D3FPL0_9ORYZ; Uncharacterized protein
STRINGOBART03G35680.11e-157(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-40KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]