PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539127.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 231aa    MW: 24956.3 Da    PI: 6.241
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539127.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.61.7e-3093180184
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        f+kv tpsdv+k++rlv+pk++ae++       +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
  KN539127.1_FGP005  93 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSR 180
                        89***************************955556888************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-4187181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-2990180IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-2391180No hitNo description
SMARTSM010194.0E-2193198IPR003340B3 DNA binding domain
PROSITE profilePS5086314.33993200IPR003340B3 DNA binding domain
PfamPF023621.3E-2793180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAATAPT SSSSSPAHHV ASASASASAS  60
GSSAPFRSDD GAGASGSGGG GGEAEVVEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP  120
LDAAANEKGL LLNFEDRAGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFSR  180
GTPAWMRRDP TLRLLEFPPH HHHGAESSAA SSPSSSSSSK RDAHSALDLD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-5686182197B3 domain-containing transcription factor NGA1
5os9_B2e-5686182197B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539127.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624169.13e-75B3 domain-containing protein Os02g0683500
RefseqXP_015689086.12e-75PREDICTED: B3 domain-containing protein Os02g0683500
RefseqXP_015689087.12e-75PREDICTED: B3 domain-containing protein Os02g0683500
SwissprotQ6EU302e-76Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0E0CPV31e-75A0A0E0CPV3_9ORYZ; Uncharacterized protein
STRINGOMERI02G26430.12e-76(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-54B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]