PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539136.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 225aa    MW: 25023.4 Da    PI: 6.9269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539136.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.91e-2885143259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  KN539136.1_FGP007  85 ADSWSWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 143
                        69************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3277144IPR003657WRKY domain
SuperFamilySSF1182901.44E-2479143IPR003657WRKY domain
SMARTSM007744.2E-3384144IPR003657WRKY domain
PfamPF031066.3E-2486143IPR003657WRKY domain
PROSITE profilePS5081128.10586145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MENHKDHTCK IATTTLVIVP LLLSLHQLSL FFLLLLPYAC VVSVAEMTKM SSMKADGSVP  60
KRRRQDVQKV VVSLKDHKVE QGPPADSWSW RKYGQKPIKG SPHPRGYYKC SSYRGCPARK  120
QVDKCRNDAS LLIITYTSDH NHDNYATTTT NSVQEQAHNP DTSDALSNGM SLAEVVTVAS  180
SKLPSEEESC DFFDELEELP VSASPLPSLS FMVQECSFSD ARTLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-17861431672WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539136.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364660.0CT836466.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-129probable WRKY transcription factor 69
TrEMBLQ688Q41e-154Q688Q4_ORYSJ; Putative WRKY transcription factor
STRINGOMERI05G02180.11e-138(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.19e-34WRKY DNA-binding protein 65