PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539142.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 407aa    MW: 46354.5 Da    PI: 9.3251
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539142.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.27.5e-152173557
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       t+ ++ q++ Le+++ + +yp+ e++ e A++++Lt +qV++WF+ rR ke++
  KN539142.1_FGP011 21 TKKSPLQIQMLERFYSEVQYPQSEDISEYATSVDLTYNQVRIWFKERRRKERR 73
                       567899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-141174IPR009057Homeodomain-like
PROSITE profilePS5007114.8351474IPR001356Homeobox domain
SMARTSM003892.4E-131678IPR001356Homeobox domain
SuperFamilySSF466892.95E-131679IPR009057Homeodomain-like
PfamPF000463.8E-122173IPR001356Homeobox domain
CDDcd000862.01E-82164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAAVRKTTAN GLAAKRENTG TKKSPLQIQM LERFYSEVQY PQSEDISEYA TSVDLTYNQV  60
RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSSR SSSFSRSTMY RTVSLRPEDD  120
RYVDKGMSFT GEKHTLRSQV LFPKDYILRK VFRKDGPPLG SEFDPLPHSA PGHLRDTTDD  180
HFYQNQRVIK KRKIVEPTTQ RSSLPCGDSG PVRKHGAGKG LMTVWHAMYS HSSKIQDGSN  240
FIDETGCLRS LRPLDDCGRI IEDCDDGKLI QVPCSRVTAP KKHPTMECHL SVDESQSPVL  300
QANQVTLVDD EELELRELQA GPNPLRCSAH LSSSGRHGCP LCKDLLSRFP PSSVKMKQPF  360
STRPWGSSPE MVKKLFQVVR FIYNRFGYMD VHPFTFDELA QAFHDKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16673RRRKERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539142.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641230.0AK064123.1 Oryza sativa Japonica Group cDNA clone:002-102-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646956.10.0homeobox-DDT domain protein RLT3 isoform X1
TrEMBLA0A0E0EEF70.0A0A0E0EEF7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EEF80.0A0A0E0EEF8_9ORYZ; Uncharacterized protein
STRINGOMERI07G19150.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.11e-52Homeodomain-like transcriptional regulator