PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539145.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 170aa    MW: 18951.6 Da    PI: 9.7068
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539145.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA44.36e-14133165336
          CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                        p+YVNaKQ+++I++RR +Rak+e+e+++ +++rk
  KN539145.1_FGP013 133 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRGRK 165
                        9***************************.88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115216.918130170IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-14133165IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860135155IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEDTRILQNH HHQILAAGRQ LQQRHHFPAM PPERHHHPPP PAPGSPAMKF PIISGDSDLG  60
KDLKFHESSA PTIAAYSPLQ EYQGHFELAL GHSMVCTNFC NSEQSYGVYS PYGAQTMAGR  120
MLLPPAIATD VGPIYVNAKQ FNGIIRRRLA RAKAEREHRV SRGRKFDLGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539145.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054543e-85AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
GenBankAP0149633e-85AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-85CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-119nuclear transcription factor Y subunit A-2
TrEMBLA0A0E0Q4881e-117A0A0E0Q488_ORYRU; Uncharacterized protein
STRINGORUFI07G03340.11e-118(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.33e-10nuclear factor Y, subunit A10