PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539151.1_FGP016
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 290aa    MW: 31799.8 Da    PI: 9.8797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539151.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06245267223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +CpdCg+ F r+++L+ H++  H
  KN539151.1_FGP016 245 SCPDCGEIFVRPDSLHLHQSIrH 267
                        8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280244267IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265244272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVEPGRARET KVTASASNSA GSDAAVMKKK KKKKLVVASR KVDEKDKKQV DYKFTRSSRD  60
ECCKVESRHQ CTEPESPSYR LALRSLFSCR NSSNSSHAGH HHHHRAADGK KLGCNSASIC  120
KVKQENPMQQ HMRRAEDELK VKDKPPVAEP YCKRRASVSA CNINSERSVK KSVKQQQQEA  180
SSSLQSSASI SASSCSSTAG GGGSFRGMQQ LSLRRLSGCY ECHMVVDPIS GVFRDSSSMR  240
ATICSCPDCG EIFVRPDSLH LHQSIRHAAT SSYRQHINLS VVQAQAGGED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539151.1_FGP016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2459000.0AJ245900.1 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCT8279540.0CT827954.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0814G11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634280.11e-133uncharacterized protein LOC4337494
TrEMBLA0A0E0DKI41e-143A0A0E0DKI4_9ORYZ; Uncharacterized protein
STRINGOMERI04G25540.11e-143(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-14C2H2-like zinc finger protein